PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098213001
Common NameGSBRNA2T00098213001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 272aa    MW: 30728.9 Da    PI: 10.1014
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098213001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573828.6e-2678163397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          ++r+w+eeDe+++L+Gl++++a++g +p++++ +fy+f+ +si  k+sk+q+++Kir+LK Kf   ++k          +++ +++f ls
  GSBRNA2T00098213001  78 SSRIWNEEDELTVLKGLVEYQAQKGNEPKSNWADFYRFLGGSITGKFSKEQVLTKIRKLKAKFIVSMQK---------GNASKSEAFLLS 158
                          78*******************************************************************.........556677899999 PP

               DUF573  93 kkiWg 97 
                          k+iWg
  GSBRNA2T00098213001 159 KSIWG 163
                          99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.6E-2079163IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
LFLSLESPNS NLEEKKIRAS LHVRMVNLDF PDGTSPPSHI LRSRKSPRKY ASKPSPPEPA  60
TEHVTKKKKK KKTLASSSSR IWNEEDELTV LKGLVEYQAQ KGNEPKSNWA DFYRFLGGSI  120
TGKFSKEQVL TKIRKLKAKF IVSMQKGNAS KSEAFLLSKS IWGLQDESDQ SANNTKSGEE  180
MANHEPSNNE VTKADFEGND ESWAVRDAFE TMVSKGLSDY QKKLQLEKLM NLGPGKRREL  240
SDEWKELCAE EVKLNIKRFK FSAMLAEAAK W*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.45720.0flower| leaf| microspore| microspore-derived embryo| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651864.10.0PREDICTED: uncharacterized protein LOC106356673
TrEMBLA0A078JXK00.0A0A078JXK0_BRANA; BnaCnng67960D protein (Fragment)
STRINGAT4G00270.14e-54(Arabidopsis thaliana)
STRINGAl_scaffold_0006_13294e-54(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.14e-57DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]